med-expansions 0.1.0 | Espanso Hub

Documentation

Create Package

Med-Expansions

med-expansions

By Cillian Scott

Systematically formatted triggers for medical writing and notetaking

Medical

Writing

Notetaking

Paste this command in a terminal to install the package

espanso install med-expansions

Source

package.yml

general.yml

drugs.yml

viruses.yml

pulmonology.yml

ecg.yml

cardio.yml

bacteria.yml

# package med-expansion
# This YAML file includes basic general medical expansions
# TOC
    # Veins, Arteries and Nerves
    # General / Clinical high-yield
    # General NON-Clinical but universally useful expansions
# Veins / Arteries and Nerves
matches:
#Arteries
  
  - trigger: "cad."
    replace: "Coronary Artery Disease$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "as."
    replace: "arteries$|$"
    propagate_case: true
    word: true

  - trigger: "a."
    replace: "artery$|$"
    propagate_case: true
    word: true

  - trigger: "cabg."
    replace: "coronary artery bypass graft$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "map."
    replace: "mean arterial pressure$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "cca."
    replace: "common carotid artery$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "lsa."
    replace: "left subclavian artery$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "rsa."
    replace: "right subclavian artery$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "aa"
    replace: "branch of the $|$ artery"
    propagate_case: true
    word: true

  - trigger: "eca."
    replace: "external carotid artery$|$"
    uppercase_style: "capitalize_words"
    propagate_case: true
    word: true

  - trigger: "ica."
    replace: "internal carotid artery$|$"
    uppercase_style: "capitalize_words"
    propagate_case: true
    word: true

  - trigger: "lcx."
    replace: "left circumflex artery$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "lad."
    replace: "left anterior descending artery$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "mma."
    replace: "middle meningeal artery$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "rma."
    replace: "right marginal artery $|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "lma."
    replace: "left marginal artery$|$"
    propagate_case: true

matches:
# General Medical
  - trigger: "pgen"
    replace: "pathogenesis"
    word: true
    propagate_case: true
# Blood Test Terminology

  - trigger: "rft.."
    replace: "renal function test"
    propagate_case: true
    uppercase_style: "capitalize_words"

  - trigger: "lft.."
    replace: "liver function test"
    propagate_case: true
    uppercase_style: "capitalize_words"

  - trigger: "shbg."
    replace: "sex-hormone binding globulin"
    propagate_case: true
    uppercase_style: "capitalize_words"

  - trigger: "t3."
    replace: "triiodothyronine"
    propagate_case: true
    word: true

  - trigger: "hct."
    replace: "haematocrit"
    propagate_case: true

  - trigger: "fbc."
    replace: "full blood count"
    propagate_case: true
    uppercase_style: "capitalize_words"

  - triggers: ["u/e.", "u&e."]
    replace: "urea & electrolytes"
    propagate_case: true
    uppercase_style: "capitalize_words"

  - trigger: "crp."
    replace: "C-reactive protein"
    propagate_case: true

  - trigger: "tsh."
    replace: "thyroid-stimulating hormone"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "esr."
    replace: "erythrocyte sedimentation rate"
    propagate_case: true
    uppercase_style: "capitalize_words"

  - trigger: "cxr."
    replace: "Chest X-Ray"
    propagate_case: true
    word: true

  - trigger: "t4."
    replace: "tetraiodothyronine"
    propagate_case: true
    word: true

matches:
  
      # Rx Abbreviations
      # Remember that to expand triggers which are normally or commonly written as their abbreviated form (i.e — MTX), append a "." and hit <SPC> to expand
      # i.e — mtx.<SPACE> → methotrexate$|$ // Where $|$ is the position of the cursor after expanding.
      # None of the prescription instructions require a trailing "."

  - trigger: "bd."
    replace: "twice daily"
    propagate_case: true
    word: true

  - trigger: "tds."
    replace: "three times daily"
    propagate_case: true
    word: true

  - trigger: "qds."
    replace: "four times daily"
    propagate_case: true
    word: true

  - trigger: "od."
    replace: "once daily"
    propagate_case: true
    word: true

  - trigger: "qod."
    replace: "every second day"
    propagate_case: true
    word: true

  - trigger: "apap."
    replace: "paracetamol"
    propagate_case: true
    word: true

      # Drugs
  - trigger: "ppi."
    replace: "proton-pump inhibitor"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "nsaid."
    replace: "non-steroidal anti-inflammatory drug"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "otc."
    replace: "over-the-counter"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "mtx."
    replace: "methotrexate"
    propagate_case: true
    word: true

  - trigger: "5fu."
    replace: "5-fluorouracil"
    propagate_case: true
    word: true

  - trigger: "acei."
    replace: "ACE Inhibitor"
    propagate_case: true
    word: true

  - trigger: "ace."
    replace: "angiotensin converting enzyme"
    propagate_case: true
    uppercase_style: "capitalize_words"

  - trigger: "arb."
    replace: "angiotensin receptor blocker"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "laba."
    replace: "long-acting β-agonist"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "lama."
    replace: "long-acting muscarinic antagonist"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "saba."
    replace: "short-acting β-agonist"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

matches:
    # /* VIRUS FILLS START
    #/Users/cillianscott/Library/Preferences/espanso/match/packages/contractions-en/package.yml  HOW-TO USE:
    # ALL Viral expansions end in "v"
    # Letter of first syllable, letter of second syllable, first letter of third syllable OR second letter of second syllable (if only two syllables) followed by "v"
    # *O*rtho*MY*xo*V*irus → omyv 
    # For Viruses with one syllable followed by virus (eg — adenovirus) the entire syllable followed by  v will expand.
    # Where possible "intuitive" expansions are ALSO facilitated ON TOP OF the systematic style detailed above
    # Orthomyxovirus can be expanded with the systematic "omyv" and also the intuitive ":omv"
      # Adenovirus can be expanded with "adev" or "adenov"
      # Appending an additional "v" to the end of the trigger before pressing <SPC> will expand to -viridae instead of -virus
      #
      # "to be added"
      # Echovirus

  - trigger: "pcov"
    replace: "Picornavirus"
    propagate_case: true
    word: true

  - trigger: "pcovv"
    replace: "Picornaviridae"
    propagate_case: true
    word: true

  - triggers: ["pliv", "polv", "poliov"]
    replace: "Poliovirus"
    propagate_case: true
    word: true

  - triggers: ["plivv", "polvv", "poliovv"]
    replace: "Polioviridae"
    propagate_case: true
    word: true

  - triggers: ["csav", "coxv"]
    replace: "Coxsackievirus"
    propagate_case: true
    word: true

  - triggers: ["csavv", "coxvv"]
    replace: "Coxsackieviridae"
    propagate_case: true
    word: true

  - triggers: ["rnov", "rhinov"]
    replace: "Rhinovirus"
    propagate_case: true
    word: true

  - triggers: ["rnovv", "rhinovv"]
    replace: "Rhinoviridae"
    propagate_case: true
    word: true

  - triggers: ["himv", ":hiv"]
    replace: "Human Immunodeficiency Virus"
    propagate_case: true
    word: true

  - trigger: "cciv"
    replace: "Calcivirus"
    propagate_case: true
    word: true

  - trigger: "ccivv"
    replace: "Calciviridae"
    propagate_case: true
    word: true

  - trigger: "fviv"
    replace: "Flavivirus"
    propagate_case: true
    word: true

  - trigger: "fvivv"
    replace: "Flaviviridae"
    propagate_case: true
    word: true

  - trigger: "togav"
    replace: "Togavirus"
    propagate_case: true
    word: true

  - trigger: "togavv"
    replace: "Togavirus"
    propagate_case: true
    word: true

  - trigger: "crov"
    replace: "Coronavirus"
    propagate_case: true
    word: true

  - trigger: "crovv"
    replace: "Coronaviridae"
    propagate_case: true
    word: true

matches:

  - triggers: ["sdos", "sdosis"]
    replace: "sarcoidosis"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - triggers: ["scoi", "scoid"]
    replace: "sarcoid"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "cf."
    replace: "cystic fibrosis"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true


  - trigger: "lrti"
    replace: "lower respiratory tract infection$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "rti."
    replace: "respiratory tract infection$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "urti."
    replace: "upper respiratory tract infection$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "vuri."
    replace: "viral upper respiratory tract infection$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - triggers: ["respalk", "ralk"]
    replace: "respiratory alkalosis$|$"
    propagate_case: true
    word: true
    uppercase_style: "capitalize_words"

  - triggers: ["respac", "raci"]
    replace: "respiratory acidosis$|$"
    propagate_case: true
    word: true
    uppercase_style: "capitalize_words"

      #Exception — Short
  - trigger: "alko"
    replace: "alkalosis$|$"
    propagate_case: true
    word: true
    uppercase_style: "capitalize_words"

      #Exception — Short
  - trigger: "acicdo"
    replace: "acidosis$|$"
    propagate_case: true
    word: true
    uppercase_style: "capitalize_words"

  - trigger: "peff"
    replace: "pleural effusion$|$"
    propagate_case: true
    word: true
    uppercase_style: "capitalize_words"

      #Exception — Short
  - trigger: "eff"
    replace: "effusion$|$"
    propagate_case: true
    word: true
    uppercase_style: "capitalize_words"

  - trigger: "copd."
    replace: "chronic obstructive pulmonary disease$|$"
    propagate_case: true

# ECG-related terminology
# Any expansions relating to ECG waves or findings (i.e — stuff ON the ECG, like the different waves or intervals, segments etc) are appended with a trailing "." to expand
# intervals appended with "i" — PR-interval is triggered with "pri.<SPC>"
# General rule is that two word or syllables are expanded with:
    # [1st_Letter_1st_Word][Chars_1,2,3_of_2nd_word/syllable]
    # So Eindhoven's Triangle is expanded with:
      # etri<SPC> → Eindhoven's Triangle$|$
      # The placement of the cursor immediately following the expanded form is to remediate the issue raised by myself in https://github.com/espanso/espanso/issues/1411 
# Where the first word or syllable is the variable portion of the expansion (e.g — LATeral lead, POSterior lead, INFerior lead), the rule is simply reversed
    # [Chars_1,2,3_of_1st_Word][1st_char_2nd_Syllable/Word]
# There is an attempt made to keep all expansions to four characters typically, and as a maximum.
# Shorter triggers exist where expansions are either common or where four characters would be too much squeeze for too little juice.
# Longer triggers exist typically under two circumstances
    # Shorter triggers that obey the rules are already in use by another expansion
    # The expansion in question is a derivative of another word for which an expansion already exists
      # e.g — "prec" is the trigger for "precordial", "precl" therefore is the trigger for "precordial" leads.   
matches:
  # Misc. General but used in ECG

  # This expansion follows no rules, sorry... But better than making a separate match for every instance of interted T, inverted P, etc.
  # Intended usage: "!i.<space> tw.<SPC>" → "Inverted T-wave$|$" 
  # "i" is included as opposed to just "!." so that you can use "!I." to yield capitalised "I" ("Inverted" as opposed to "inverted")
  - trigger: "!i"
    replace: "inverted"
    propagate_case: true
    word: true

  # R waves/intervals
  - trigger: "rw"
    replace: "R-wave$|$"
    propagate_case: true
    word: true

  - trigger: "qrs."
    replace: "QRS complex$|$"
    propagate_case: true
    word: true

  - trigger: "rri"
    replace: "RR-interval$|$"
    propagate_case: true
    word: true

  - trigger: "pri"
    replace: "PR-interval$|$"
    propagate_case: true
    word: true

  - trigger: "pw"
    replace: "P-wave$|$"
    propagate_case: true
    word: true

  - trigger: "sts"
    replace: "ST segment$|$"
    propagate_case: true
    word: true
      
      # Q wave/intervals

  - triggers: ["qtci", "qtc", "cqti"]
    replace: "QTc-interval$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "qti"
    replace: "QT-interval$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "qw"
    replace: "Q-wave$|$"
    propagate_case: true
    word: true

  - trigger: "tw"
    replace: "T-wave$|$"
    propagate_case: true
    word: true

  - trigger: "rbbb."
    replace: "right bundle branch block$|$"
    uppercase_style: "capitalize_words"
    propagate_case: true
    word: true

  - trigger: "lbbb."
    replace: "left bundle branch block$|$"
    uppercase_style: "capitalize_words"
    propagate_case: true
    word: true

  - trigger: "sw"
    replace: "S-wave$|$"
    propagate_case: true
    word: true

  - triggers: ["junr", "jrhy"]

# The Heart and Cardiology
matches:

  - trigger: "boh."
    replace: "bundle of His$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "purk."
    replace: "Purkinje fibres$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "hps."
    replace: "His-Purkinje system$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "rmb."
    replace: "right marginal branch$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "hf."
    replace: "heart failure$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - triggers: ["ctamp", "ctam"]
    replace: "cardiac tamponade$|$"
    propagate_case: true
    word: true
    uppercase_style: "capitalize_words"

  - trigger: "vsd."
    replace: "ventricular septal defect$|$"
    propagate_case: true
    word: true
    uppercase_style: "capitalize_words"

  - trigger: "lvh."
    replace: "left ventricular hypertrophy$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"

  - trigger: "acs."
    replace: "acute coronary syndrome$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - trigger: "ihd."
    replace: "ischaemic heart disease$|$"
    propagate_case: true
    uppercase_style: "capitalize_words"
    word: true

  - triggers: ["peric", "pcar"]
    replace: "pericardi$|$"
    propagate_case: true
    word: true
    uppercase_style: "capitalize_words"

  - trigger: "cmyo"
    replace: "cardiomyopathy$|$"
    propagate_case: true

  - trigger: "rpol"
    replace: "repolarisation$|$"
    propagate_case: true
    word: true

      # Exception made because "dpol" = "DNA polymerase"
  - trigger: "dpol"
    replace: "depolarisation$|$"
    propagate_case: true
    word: true

  - triggers: ["emb", "ebol"]
    replace: "embolis$|$"
    propagate_case: true
    word: true

  - trigger: "pemb"
    replace: "pulmonary embolism$|$"
    uppercase_style: "capitalize_words"
    propagate_case: true
    word: true

  - trigger: "cad."
    replace: "Coronary Artery Disease$|$"
    propagate_case: true
    word: true

  - triggers: ["msten", "mste"]

matches:
    # /* BACTERIA FILLS START
    #/Users/cillianscott/Library/Preferences/espanso/match/packages/contractions-en/package.yml  HOW-TO USE:
    # For the full name of the bacteria (ie — Staphylococcus aureus as opposed to the shortened S. aureus) use the FIRST LETTER of the GENUS followed by the first syllable of the species.
        # e.g —  Spneu → Streptococcus pneumoniae 
    # For the SHORTENED name (ie —  B. pertussis as opposed to Bordetella pertussis) use the FIRST LETTER of the GENUS followed by "." followed by the first syllable of the species
        # e.g —  c.tet → C. tetani
    # THERE IS ONE EXCEPTION — Salmonella enteritidis can, for obvious reasons not be triggered by "sent", and so "senter", "salment" and "salme" all work.

  - trigger: "pplo"
    replace: "Pleuro Pneumonia Like Organism"
    propagate_case: true
    word: true

  - triggers: ["mcata", "mcatar", "morc"]
    replace: "Moraxella catarrhalis"
    propagate_case: true
    word: true

  - triggers: ["cbur", "coxb"]
    replace: "Coxiella burnetii"
    propagate_case: true
    word: true

  - triggers: ["lpne", "lpneu", "legp"]
    replace: "Legionella pneumoniae"
    propagate_case: true
    word: true

  - triggers: ["paer", "paer", "pseuda"]
    replace: "Pseudomonas aeruginosa"
    propagate_case: true
    word: true

  - trigger: "amyc"
    replace: "Actinomyces"
    propagate_case: true
    word: true

  - trigger: "amyc"
    replace: "Actinomyces"
    propagate_case: true
    word: true

  - trigger: "cdif"
    replace: "Clostridium difficile"
    propagate_case: true
    word: true

  - trigger: "c.tet"
    replace: "C. tetani"
    propagate_case: true
    word: true

  - trigger: "c.dif"
    replace: "C. difficile"
    propagate_case: true
    word: true

  - trigger: "noc"
    replace: "Nocardia"
    propagate_case: true
    word: true

  - trigger: "ecoc"
    replace: "Enterococcus"
    propagate_case: true
    word: true

  - trigger: "efaeci"
    replace: "Enterococcus faecium"
    propagate_case: true
    word: true

  - trigger: "efaeca"
    replace: "Enterococcus"
    propagate_case: true
    word: true

  - trigger: "ftul"
    replace: "Francisella tularensis"
    propagate_case: true
    word: true
      
      #Add
  - trigger: "s.mal"
    replace: "S. maltophilia"
    propagate_case: true
    word: true

      #Add
  - trigger: "smal"
    replace: "Stenotrophomonas maltophilia"
    propagate_case: true
    word: true

      #Add
  - trigger: "sangi"
    replace: "Streptococcus anginosus"
    propagate_case: true

Made with